NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0058697_10029591

Scaffold Ga0058697_10029591


Overview

Basic Information
Taxon OID3300005562 Open in IMG/M
Scaffold IDGa0058697_10029591 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Ma.e
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1983
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009855Metagenome312Y
F080473Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0058697_100295911F009855GGAMHPHLDREAIVRDIETTRYGRDYAGRRGKITHVDKDPQTGAATGYILRMEEEGGNEVRFESEEIHIIEAWD*
Ga0058697_100295912F080473GGCGGVEQPEEKNVRSLAESVLFYAGIPAALLYPLGVLAVGIQLWLDPLFPYVRLDTVWIAVSLIPERVLIGTGIRLLLFALLSTAFAIGVSVLLVRGLILLGRRPAEASAVLPGRRGWMLYLLLLIPLAVVVLWSSVRVNSATEFAYFIGFFVFSAAAGLVFGYVRWASTAEHFYVTMVTAYLGGVAAAICLAATQTPPLPLVETRADRNVTLTCSKVSAEDMFVMLDRGDSYLYLYNKEGLLSLPEGDAETVRFRECQGYLDRD*
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