NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068855_100532780

Scaffold Ga0068855_100532780


Overview

Basic Information
Taxon OID3300005563 Open in IMG/M
Scaffold IDGa0068855_100532780 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009482Metagenome / Metatranscriptome317Y
F018405Metagenome / Metatranscriptome235Y
F066093Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0068855_1005327801F009482GGAMLKVEMAPLVIPLLLIATPTVADVTSELARCELEAERLFPAPHNKGAQNWPERASNLQKRAENIETCMRAAGYGVTAECSAPLKTYESCMKIADKLMRGPTGSQYRDADWNRICLDNEWDVRTQERLSADCYQSGGWWRRWL
Ga0068855_1005327802F066093N/AMGCACTGRVRSLASATHVVLLTLISTLDAAETSICTVAANPSGFDHRQLTLEGIVAGLTKGTSRSGRKDMTFLLRSPVGCGGVIVYAQEPATLRNGDHLQVEGVFETQHRRDGSTFHNEMQATKITTLPR*
Ga0068855_1005327803F018405AGGMNTSDIYRQAIKRTFAGLYGVAPDKVDVSWSDTGDNITVRCADKTFTHETLHDDDEPTLEFVGDGAVTVRLTTAELLRLEGID

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.