NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070664_100052451

Scaffold Ga0070664_100052451


Overview

Basic Information
Taxon OID3300005564 Open in IMG/M
Scaffold IDGa0070664_100052451 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3455
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023978Metagenome208Y
F049056Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0070664_1000524515F023978N/AMFLLIALVSVSVFARTPMNTLTYPGFPVFAKTLKGERVSPVIESSFKKRYGPLTNVSWSVIDDVSDVRITIATFTEDGDQKEVYYYDDGDVYGIGKTIRRDALPELVTKSIQSRFASGVIQTAYEFQERTSSTRYYVRVVTPRHSMIVSANEFGETRVYQKEKLKHLFE*
Ga0070664_1000524516F049056N/AMLLTLVALNLTARTPAGGPDPGPAVFSKGVSVEISPLIEAKFKKEYGPIVNVSWRVVEDISIATFSDQGSEKNVFYYNDGETFGFGKAVDIKALPKLVDESLTRKFKKATIGQAYEFKTTGSPTRYYVRMIASGYSVIASATEFGDITVYEKQKNK*
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