NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066703_10020286

Scaffold Ga0066703_10020286


Overview

Basic Information
Taxon OID3300005568 Open in IMG/M
Scaffold IDGa0066703_10020286 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3418
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013998Metagenome / Metatranscriptome266N
F014491Metagenome / Metatranscriptome262N
F019978Metagenome226N

Sequences

Protein IDFamilyRBSSequence
Ga0066703_100202862F019978AGGMPEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSDQLAKEEQKVGEEQGFCKCARNNPKT*
Ga0066703_100202863F013998GAGGLKMHRLLSLLAFVLALIGGVLVVVSALGGLAHLSIGSLAINGLVFLFGLCAILGGWMIYTGIRKLGGIMTLIAGIILFVLMGGAGTSVLLVLAAGVLGLLAAELKPWWAFWR*
Ga0066703_100202864F014491GGAVTAGNPKSSWHNTAMFLLVLASLAMFGTIAYTITLQDISNYAVTYITGLLISVTGILLGLSGILPISKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTTLTPLLRYQFLTGIGLFTILVVFYSTSTIEATRQRLVAAQAAKAGQPGNTTG*
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