NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066705_10142521

Scaffold Ga0066705_10142521


Overview

Basic Information
Taxon OID3300005569 Open in IMG/M
Scaffold IDGa0066705_10142521 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1465
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F018046Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0066705_101425211F018046AGTAGGMPVVGSSAYNTAGQITALVRSLLNDSQGNLFTDSLLLPY
Ga0066705_101425212F000739AGGAGMMTRLELWLKGLLAAAISGGAGGILTGFAAVGIDPQHFNLQAGLGSTMRIAIAAAAINSIIGVVAYLQKSPLPEEAK*
Ga0066705_101425214F000512N/AMNRKTILRAKIVPQPRFTPVTILRETHDTPESVAHQLELAGGLNTFGEPNYRAVWGWNRLAWIGGKFEERDPENGSLLREVVDLRLEPKYPAVNRWHIEKWLPAEAYGSPRAWYAQTLEVAGGRNIPALGPYPARGEYEHCFTLEDRHGNFVQLTATAAEHIARAIEWSRKHPRSKSRRAIDDREQRQEREYEAWAYDMLDDAVPAFHRQPFVIVA*
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