NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066708_10041747

Scaffold Ga0066708_10041747


Overview

Basic Information
Taxon OID3300005576 Open in IMG/M
Scaffold IDGa0066708_10041747 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2524
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003587Metagenome / Metatranscriptome478Y
F030116Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0066708_100417473F030116AGGAGGMKKHRIERNLLFPSREFRDRVRSAASERGFRSEQAFILTACEHELRQGDNTEATAQLEARIAATLANMAREVQSLFTLVHTQVALTNSLLQYVLTCVIEPPEDVLPAARGRDSDTQRFSASPLRR*
Ga0066708_100417475F003587GGAGVAVPPRGPLIRMLVRPVAIRRNVGFDVFNVRLLVGLDKLLRAKRRYQGDLSASINDALLAVNLNSVKLVTLQGKKKQTARETQLVLLRRLIRRIKRIADARGCSMNQLVNSGLLAYYAKKMR
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Institute for Fundamental Biomedical Research
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