NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068854_100393745

Scaffold Ga0068854_100393745


Overview

Basic Information
Taxon OID3300005578 Open in IMG/M
Scaffold IDGa0068854_100393745 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1144
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041268Metagenome160Y
F092245Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0068854_1003937452F041268GGAGMSAARGLRTSTTPTVAETVAGPFVWTFDDSLADCVADIEDTLRRAIVQLGDVTSIVVLIELSLPALRRCVDSGETIQPAWARFVERLSTRYGLPEPPRIRMLKGEGPLATLVIAYRS*
Ga0068854_1003937453F092245GGAGMTLKRWMLGKANDTAKRKTRLRTPMIGGGADLDPPGSGFNRFGKRTVRAAEPVHLGPYAPLIGAIREELEQFAANQLRLHLAIAERDRYVLSSIEVECEGGDGDHELLRRFVREFRPEQVKQYLAKEVIAGLRNASSIDLSQFAGLNAERGDTQANDNEERYGDLIAELSSGAASSPARAFRVTLVGRWSELPAPTTDARASAAQAPRTPLAARPVIVDIDDARHARH
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