NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068854_100536526

Scaffold Ga0068854_100536526


Overview

Basic Information
Taxon OID3300005578 Open in IMG/M
Scaffold IDGa0068854_100536526 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)990
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104635Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0068854_1005365261F104635N/ASTTAEQRGDATTATDPATAAGFYRIAATTAWTAGPPRNQQLLTLRDKGEGVCAKVNADPAQQPRDCSFIRIAPELAILDQQAAATKALVSSGATLGGANLTKAKSIADTTSKSIRRVIEGRPPPASQSKSFDDYLVQNLNTAFCNLQGLVGLPRSATAEELKPLIASVRAAQDALQAASISTQCSAG*
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