NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049083_10015938

Scaffold Ga0049083_10015938


Overview

Basic Information
Taxon OID3300005580 Open in IMG/M
Scaffold IDGa0049083_10015938 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007752Metagenome345Y
F025741Metagenome200N
F082687Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0049083_100159384F025741N/AMENTTISQFVSDNVEGDPAFKGYVVSELKDLVKQNPTMSLSELLQDATESALEQWDTDQYSDYYQE*
Ga0049083_100159385F082687GGAGMASACLNVGHGGAASESSLVQMNNLFDVTTYLGNFFNATEIDFAVERLLKDDMIPGGVGCFTLSRAGEAVFYYQGKPVAFITRLASEKGCDANVGKWYRKQWYFENYLKKQNPDCNHITFVHASSGTGMLRDFMTGVSMVMTQSFNSEGFNSPNFGGNSIYCFDTDKNEETWTTVSAVITSIVSLTLCKMKTDKLKDLFTE*
Ga0049083_100159386F007752N/AMENTTMQLWEVKGFESSAVKALFIGKTVNGQDCIGCAWDAHCTYIYAYDGIIDTFLYYLETFKSVGQAMAATKLRDGLQDQTYYSPYWSTMPTKVHNQLYRFSNYDMIHYMRNIVVHQNVCFDTPENAIKNLISSGDL
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