NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049083_10130854

Scaffold Ga0049083_10130854


Overview

Basic Information
Taxon OID3300005580 Open in IMG/M
Scaffold IDGa0049083_10130854 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068846Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0049083_101308541F068846N/AIYKEMKKFSKLILETKSESRTMSPLTNPVDWDEIFKPLIEHIENNLQSKVQGPGSAVFSSKTKGLLDQFIDQVEEDYKDYFQYEMHDGSQESFLQAFNINVDYRDIMDCIQPLLDRTGDVEDSGNFDFGAFVIDIVSIMYNTNEEIVEDLLDVHGKLKMLDTEFTMRVTKSKGSRETETISLTEKLTDVNDLLDIMEGEKISNIIIYIYNKETVQAVDLDD*
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