Scaffold Ga0049081

Basic Information
Taxon OID	3300005581 Open in IMG/M
Scaffold ID	Ga0049081_10000064 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005581 Open in IMG/M

Scaffold ID

Ga0049081_10000064 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37244
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (21.43%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

37244

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (21.43%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F014249	Metagenome / Metatranscriptome	264	Y
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F034928	Metagenome / Metatranscriptome	173	Y
F044972	Metagenome / Metatranscriptome	153	N
F058998	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000006410	F009267	N/A	MKKTKNNELQKDDEILRIQAMEDGPKKVNGHLLRPITALTISWMQRNEVFSGDMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIEKNMIHHLEISAMTSAMNAAFEFYNASATQSKEGSGSGN*
Ga0049081_1000006420	F011668	N/A	MSARKIALLMILLSFVFLGMALLTSCAGFHNPAFCVKTDYGTFCYELPEIPSLKK*
Ga0049081_1000006437	F034928	AGG	MNNPRQQSWRGYSLRCWPNHQDDCYRWDWEVKIGEEWVEVVTQSTRWIEEEAEESLQRYLKRQQK*
Ga0049081_100000644	F008495	N/A	LKILIVYHLRLGDIARCLPIAKYFADKGNKVWFECLPEYHGLFELVDYCTPLYPQNSRNDFDRVIDLQIWPDLHQEFCQSEKNWSDFVYDLLPEGKDINRQIVLNSPSIITPPELKSWVLCFPTGYSQDKKIHPAEVIQAAHQIANGRPVLCAGKAAHGMREFESIEYMCAYIRDAQEVVTINTSSSILASALRKNWIHISDSPKHDFFHPNQSRIERKF*
Ga0049081_1000006445	F058998	N/A	VTKNNKTTNSSDLQDKIRDAQVKNILEKLKSGKTLTARESVIIGEYAAEKDNNGKKLTQRDIAKAWGMTQPNVHKMVKQGMPMDSMEAAAEWRKDFLEGRGRGSDAPASLNDARLRKTLLECERIELALAVDRGEYSKNTEVKESGIRVGSIFTAKLNALVNDASGALAGLDEASLKKKLHERVQGILAEIQMELAKV*
Ga0049081_1000006447	F014249	N/A	MAMNKTYFGLPLAILQELQTDFTACLKAIAVAGASYSIAGRSFSRANLTEVAQTIKELQAAIDNAGGNRVTRYTPTFPTQRP*
Ga0049081_100000645	F020694	N/A	VGLLDIFTSDLCAVLNELPMAVTFGGRDFLANRTTYRRENTLGDGGFMNTAAMTITAIYDSQTQTISLGDILVIGGRKFRVLAADLSQDAVSVDFTLEDINK*
Ga0049081_100000647	F018136	N/A	MITDSTYTLTLEKALTDAFILALQQEMQGSLVVTAAENFGTITLPACFVKCTRQRESIINSAIFEFNVDISLVVQADDSDQMAFENLWSQVLCISHDIFGLKTKINSIRPQYAFVFGILRDGAVSFSTTDRHFERSVTITAHASLFAS*
Ga0049081_100000648	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVINGGVAYELANILTLANDTSSYGVSGGAVIVDSVAEKTGAGTFKTITVSATQYPEIV*
Ga0049081_100000649	F011222	AGGA	MEPNKKFFHTINLKAAVALATLGFKMNKPPITRLVRTDGKESTEFWFEGENNKGEEASKVYRQMTKEGDELEESDPENPICYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASEKTKKEMTRFLK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049081_10000064

Overview

Ecosystem & Geography

Associated Families

Sequences