NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10000854

Scaffold Ga0049081_10000854


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10000854 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11603
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F000332Metagenome / Metatranscriptome1283Y
F001061Metagenome / Metatranscriptome789Y
F005117Metagenome411Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1000085411F000324GGAGMNLITPRFTVTQDGTTLNVYHANKGEGLPKHDHVFSHLTMCHSGSCVVSNERRSLVMTKDTQPVNLMANEWHEIEALEDGTVFVTVFAGGKY*
Ga0049081_100008543F001061GGAGGVAELNVRPPNLPLAPDEYDRRYQDQLNNTLRLFFTLLNNPGDMGGATLNLNLNTLPTDADLPTLRLGDVYRDTQDGVQDTSQMLRIKTST*
Ga0049081_100008548F005117GGAVKISYDKWYPVVQPNPPMQSEVFAKRVERLDAERAVQVQIDQQVKKFHQYEYEIYEYRMRQVTINIDITNLKREIDKLV*
Ga0049081_100008549F000332GGAMRWLLLLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTQRHKEMLAWLIHNAEYCKTTDYTVIWNNLPDWAGTADTVILRSKIIHGYKDALDREKK*
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