NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10002249

Scaffold Ga0049081_10002249


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10002249 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7281
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016804Metagenome244Y
F024744Metagenome204Y
F041736Metagenome / Metatranscriptome159Y
F053994Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1000224916F053994GGAGGMSLVVSGLQHISKVCGKTDTESLRTWLMKTARSTPDTHSTERKYMSTGNAHKEMPGSGVMYWEEEEMRKSPKGPDFKGFIVLEMDYKAGEKLKIAAWQKPTSRGHSLLALKEDNWSKKKREEERGDKEVVPSYNRRPSRNNDEDVPF*
Ga0049081_1000224918F024744GAGGVSDMKPTPQQLQMSQDSLNKANNSMNYTINLVNMSLQQLWNIAYAAGFEDAQEIMKTDRGQQQ*
Ga0049081_100022496F016804AGGAGMSKLRTATIPDHHKVQATATLNEAIDEAPDTVIVLSFWKDKGQFKIKTSTTTDRLVIIGALEEAKLKFQLDGYV*
Ga0049081_100022499F041736AGGAGMILKSQSMRFVMATMMDVEHEWQTSKWKDKSDMIDPDVPMIVQIGDYGYEVQSCGGDSDIEGFVIMCKDEPVCKWEGMECIKLKENT*
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