Scaffold Ga0049081_10006331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0049081_10006331

Scaffold Ga0049081_10006331

Overview

Basic Information
Taxon OID	3300005581 Open in IMG/M
Scaffold ID	Ga0049081_10006331 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4474
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015866	Metagenome	251	Y
F017297	Metagenome	241	Y
F093536	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000633110	F093536	AGG	MQTTSQNFHSMRGHVADGCIIISPSGKKFTLKNTISGWMIFGPDDKPRSGNLKSAYDVEFFVVYGLQNS*
Ga0049081_100063318	F015866	AGGAG	MWKAKLDSWNFCFEAYHEKEILAIEHLKLGLNNHAKQYNLENDWWHEYGGDIYTVQIHLGTPSFNSCYRDNELIKLK*
Ga0049081_100063319	F017297	AGG	MKIKEQKNGNYTTFERTFPSGYYVVKLYKRGELIDKVMTDTYRAASDYFKSFNLIAKNS*

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