NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0049081_10013090

Scaffold Ga0049081_10013090


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10013090 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3133
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004475Metagenome / Metatranscriptome436Y
F011077Metagenome / Metatranscriptome295Y
F014144Metagenome / Metatranscriptome265Y
F037701Metagenome / Metatranscriptome167Y
F054581Metagenome139Y
F098668Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0049081_100130901F098668N/AEYLIINNIPNLISASGSFNLDEALRAVAELHIPEGTLFHRCQEDKKPWPCLTIQAIEKELTK*
Ga0049081_1001309010F014144N/AMTNKRVAVCEVCNKEIEVRWGIFANDTLKRHIKEHVNGA*
Ga0049081_100130902F011077GAGMMADNLTWAEEDVNLWKGWTYSPEKNRYYFDDIGNESLAAFWADEFLNQAYS*
Ga0049081_100130903F037701GGAMIRSKEWRVNTRVWVSTGFNPRRIALGFSVDRFNANIDFLWFWVTIEY*
Ga0049081_100130904F054581AGGAGMCPNCNTQLIPILYGYSGKKYLDMHRQGLIFLVSTTYHTKHSPTSYCKKCEESFDIKP*
Ga0049081_100130907F004475GAGGMGNWTEELTDEQKEQVWYFIVETVKEIREQIAQDILATADLWMAKGQLKSRKTSKAFLVSAAIARGQNEI*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.