NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10043991

Scaffold Ga0049081_10043991


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10043991 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1693
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024112Metagenome207Y
F040618Metagenome161N
F081344Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_100439911F081344GGAGMTLDMVNRLFLVVVWTGGILAFFGHMRFYTITGLKVLKTILTILAYATPLALVYGLFEWIITGDGKVAYWLFQKGVMACILGLFYYFFCCILS
Ga0049081_100439914F024112AGGAMKIEDYDKERATVLNALYCSVRSAIQTENLHNNHRIEWIENDFEVCRKKLEAIEEEMRVLLGDPFAEEAK*
Ga0049081_100439915F040618N/AMENTTTVRMSMTVQVEDVSDKSSCIGYVGQGTWFDGKAFIVTQYKANPAYWYFFVYNDFIPQENFFKGFEGVYSYGNEIWHLNPDNGHFSGIVYLFSAMTDTLYIPFSISQP
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