NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0049081_10074674

Scaffold Ga0049081_10074674


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10074674 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011646Metagenome / Metatranscriptome288Y
F022400Metagenome214Y
F029678Metagenome187Y
F034906Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_100746741F022400AGGMRKIGIESSPKTTLRLVGAGEGESGSALSPFGPLKVGLITMQRTKEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTEHLVRHTSSFSNTGITDSI*
Ga0049081_100746742F034906AGGTGGMKNTHRVKAAADQAVRQRNYRRARERALTRLANDYPNLYRSYLEEEKKADVKMGKKWLDIDGNTKSTASGSR*
Ga0049081_100746743F011646GGAGVSNVVELRNGSVKRIIFYEVADQQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV*
Ga0049081_100746745F029678N/AMSRVKGFIIFNQETGQKMATLPLTIPIGSTVEAYQRAGHKVGWAWEEGESE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.