NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049080_10000960

Scaffold Ga0049080_10000960


Overview

Basic Information
Taxon OID3300005582 Open in IMG/M
Scaffold IDGa0049080_10000960 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9772
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
Ga0049080_1000096010F009266AGAAGMNKKELEILDKEIQYLCEQQDRVKAIREYTGINPGYTFLREVETIESLYKSVLENRKHDKSTYFSCGTSGWYVVYLRNKKTYKKGEKFRIKIFHTFVWTDNID*
Ga0049080_1000096011F002398AGGMILPLLHIFLLTSVDPIKNFVSLKIYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFDFFAYLDTIGIEHTKVGSYYFFNKKPK*
Ga0049080_1000096013F019834GAGGMKELKFTITGTIFVPDNVEYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHNIGFFEYEDAYFED*
Ga0049080_1000096014F002406N/AYSMENIKWIRAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDEE*
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