Scaffold Ga0049085

Basic Information
Taxon OID	3300005583 Open in IMG/M
Scaffold ID	Ga0049085_10013656 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005583 Open in IMG/M

Scaffold ID

Ga0049085_10013656 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3135
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3135

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.5046	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.5046

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002935	Metagenome	519	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_100136561	F001125	AGGCGG	MGDRANFGFRDSKENIIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWASETGWGLNVNEIGDNEHKVPVIDWKNRTFTLYEHDLHSPVFSLALDAFVTKYSSQPSMV*
Ga0049085_100136562	F047650	AGAAGG	MIMEDLQVVYYCDSCNVARASYLVKLMEGELAFCGHHYFKNKGPLDEKSYEVIELNKVEEDAAVPQLTKAE*
Ga0049085_100136563	F001043	AGG	MSDYRDGFDDGYKFAREELMEKLSEIDINDIDSWILDRLCEMIEGGKL*
Ga0049085_100136565	F000980	N/A	MTKYQKYTWVCTSECDALIEYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDSPLPTKEETMETETPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQANMYSSKIDTVKDIITEAYADSDDQETLRSIAEALDIELTRTVEWSATIEVSGTLELDLLGDYDTDVEQEIYENLNVDSQNGNIEVVDQEVTNVREN*
Ga0049085_100136566	F002935	GAG	MRERMTGYTGNVLDGKKLAEIANDIYRAQYSNDFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVESVKACQTIFKKEVSDYIRVFGDRLDSNCSLWQSKMSVAPATILG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049085_10013656

Overview

Ecosystem & Geography

Associated Families

Sequences