NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049085_10032241

Scaffold Ga0049085_10032241


Overview

Basic Information
Taxon OID3300005583 Open in IMG/M
Scaffold IDGa0049085_10032241 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1942
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.5046Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012446Metagenome / Metatranscriptome280N
F019614Metagenome / Metatranscriptome228N
F071998Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0049085_100322411F019614N/AMLEVSIWVVYSIYTMNVASIASNKIQVEYSAMPGDGREFLTFKVPNGWDDVKLLTNKVLTHNSKDFTFSGWNSDRNECYFVRLVNGPSFVASIR*
Ga0049085_100322412F012446N/AMKKLQKEFTGNYDKVGMNKFVQIRNENNVAIYQRFNTDGTPRSYEVFIIKVVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCREIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGNKIKLDMTLNKGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV*
Ga0049085_100322415F071998N/AFPMAKRIAVENFTSGYDNLNMEASMNLSADTACYRWNAHTVKAIKYVLNNKPKNTR*
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