NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10002631

Scaffold Ga0049082_10002631


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10002631 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5766
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006220Metagenome378Y
F007310Metagenome353Y
F010398Metagenome304Y
F013084Metagenome274Y
F018927Metagenome232Y
F043399Metagenome156N
F048994Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0049082_1000263110F018927AGGMNKHIEITRHLTVDGTSTYYVVEKTKNSSSIIWNGTCKQAAYQVAYRNARKGNTPLYDTLYKAELDRNGVKHIIPIGNELLEVNN*
Ga0049082_1000263111F043399N/AMFINDYPIVIWTIVKKNNNYILLDSCGIEVFRRKEDRKKEIYQYCEDNGIDIQEEF*
Ga0049082_1000263112F010398AGGAGMEISIQGVTKVNYELVIDEDVFNEACEEAGLDPANFKKFTKDDWNELNPHLVQAVVDSESEIDYTEIHAPHTVYADTLTINDRKHMTTVYYEEDRKTGSVEIL*
Ga0049082_100026316F048994N/AMIGKVKIESGFINLYVNGVCVVSTSTMAEIRDALKRYNLQGYIMGTE*
Ga0049082_100026317F006220AGGAMKQKKYNEELNLASGTEMMRASQMRPTSFKDKSKYSRKAKHKNRQENNSGDSF*
Ga0049082_100026318F007310N/AMRTVLWNNTEQWLNYHHYELLIEDITGFTLKESLCAESVKYMAKRLRDTSYHRTFRVKYTIFEDEYKTLVETFNKQADNNGKIGIK*
Ga0049082_100026319F013084N/AMGILSIIVLMEETKKVVLSRGHNVKNWLVLGNDCYALECSDCKMSCMIKEKPLPNEIKAGGEALAVNCVKPVKEKKLRKK*
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