Scaffold Ga0049082

Basic Information
Taxon OID	3300005584 Open in IMG/M
Scaffold ID	Ga0049082_10003027 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005584 Open in IMG/M

Scaffold ID

Ga0049082_10003027 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5426
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5426

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100030271	F001106	AGGAG	MSFETLKVAELRKVAEDFAVDTDGIKSKADIVAALAGEGVTWSVYQKTIKDIEDATDEFSENAEEILPRFNPDAQPENTVLVRMTRENFRYDMEGFTFTKEHPFVAMTEEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0049082_100030272	F058150	N/A	MEILVGSNSPITHKVFWQGQLTDSDSLPVVRLYDITEDPGVSPAINPATILSTLTPVKSEVDAGTYIVYIPLAYTDRQRQLKLSWTYSVGGTSTQKDNKIFVQTPYTDMSQAIESLGLGSDYSDPNTRSYAELANAERYARKLIEAYTKQQFFLYDDIQTAYGSGSDVLPLPYKISTLHKLYQNDILLLDTLNSVNNWNFNTVISESGFGIRVNRANMLDNTVYIANGMVPPTISDTWGGSFNAGATYRVQGKFGWKEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGVYSGTGNLYADQLLLPYVLNQMVVI*
Ga0049082_100030273	F056615	N/A	MYALVDSILPMFMDVYRQFDSQDPDTGSIKKEWQFDRTIPCSAKGDISNSSSVNSKNSQVLSNKYSNNEILQIRTTDGVTLREKITNIRNLEGQVIWEELNFPTNTPTVYEILSTTPMTDPLGGTIGYNSTVKRSENQQIGQ*
Ga0049082_100030274	F035307	GGA	LDNSSLLVTAASGLQKGMAGTSGRVLKDSTVAQISAAIYYHAQVVSKLTTSKAFEKKFQSVIFKQIEQDFGLYVDSQARVNPKSLHHVYEWNKAGDKGARLFNLSIASTDGLSFKVASKFLPSKSAVPNEFGKRKHVFINKASVMEAGMPLTIRPRYAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNSAIKKSGFQQIFNSSLTKAMRVPSDVRKVKYSFSPNTLKMQADSAVEAAFGGVA*
Ga0049082_100030275	F000258	GGAGG	MTDYKADVMIDLRKFLWSQLKSNNIFTDTDYYSDNIGQEIIPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEENWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDTNGYSGPSSKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHVGTTGRFL*
Ga0049082_100030278	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGIDLDVEEEDSAPQAKTFDDVKRKALGIEASGDDIVSLQGSLASQAGFGIGAGLGYTKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0049082_10003027

Overview

Ecosystem & Geography

Associated Families

Sequences