NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10014858

Scaffold Ga0049082_10014858


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10014858 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2663
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F006182Metagenome379Y
F009266Metagenome / Metatranscriptome320Y
F010618Metagenome301N
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
Ga0049082_100148582F009266AGGAMTDKERKILDKEIQYLSEQQDRVKAIRQYTRINPGYTFHREAETIEYLYKSVLENRKLEKSSYFSCATSGWHVVYLRNKKTYKDGEKFRIKIFHTFTYTDNAD*
Ga0049082_100148583F002398AGGAMIALLHIFLLSSLDPIKNFVSLKTYISENAKIHCKVYWINEEIPNFPRVNTIEKSRFDFFGYLDTIGIEHTQVGSYYFFNRKPK*
Ga0049082_100148585F019834GAGGMKELKFTITGTIFVPDNAEYEYDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDENLKSHDLGIFEYEDAYFED*
Ga0049082_100148586F002406GAGMENIKWIQAMSDRLRDELSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESNYFEDAE*
Ga0049082_100148587F010618AGGAMTLKELILKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEIEQED*
Ga0049082_100148589F006182AGGAMEVPDDAIKHYDVAGELYALEFNDIMYMLQVCVVAEAGAGGFDILHQFEEMENHNIKNVHYDEVNFIED*
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