NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10016260

Scaffold Ga0049082_10016260


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10016260 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2551
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004476Metagenome / Metatranscriptome436Y
F004583Metagenome / Metatranscriptome432Y
F071169Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0049082_100162601F004476AGAAGMLFSKQGFKTVDTTEEFVKQVMEFGQKDIVLSVTHSNGVIDIVVSPTMDAIEADVYHFLNDETELKYTMPIKSLTASYISSLSLTSAIHTYLSEAFKVADIFARTTRQS
Ga0049082_100162605F004583AGGAGMRTTRNSDRLREILFSTRNQIVSLKDIQMDMLRIDSKVANQIATQISALEEVYKHQMSLVCQTESVEPKRNGWFSGHVKTKEDRLANIMD*
Ga0049082_100162607F071169AGGMSSIEVQVNLDELDVVRRKLSFKCNKDFTAEETIQFLIEREYNTINKPRHTAQKSDIKEAIYNGYTSTEAMKKLNVSRSTFFRHKAKERKLLEESE*
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