NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066691_10337192

Scaffold Ga0066691_10337192


Overview

Basic Information
Taxon OID3300005586 Open in IMG/M
Scaffold IDGa0066691_10337192 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008765Metagenome / Metatranscriptome328Y
F058041Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0066691_103371921F008765GAGGMAAKDEKLMTARERAEEKVRAIVEDLDRPTLALLYRTLHDALGFRLETANI
Ga0066691_103371922F058041AGGAGGMGFFRGALRAPAAVRTPVAVFAVGRRVYVACGDRTTRVALTDDSGKRPLATLGDGTEVAILAWRPGWAGTTRYRVRATASHLEGWLPVANLRGTETAVSPAPAASPAPAVPRRAGVRES*

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