NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070727_10060814

Scaffold Ga0070727_10060814


Overview

Basic Information
Taxon OID3300005590 Open in IMG/M
Scaffold IDGa0070727_10060814 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2240
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020172Metagenome / Metatranscriptome225N
F064767Metagenome / Metatranscriptome128N
F093736Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0070727_100608141F020172N/AVYNRGMCTTVKRAMFCTRNGYKHIENLDKVCELIGRLKGLTESEYLDLCAINKLENARALEMAKHYPSH*
Ga0070727_100608144F064767GGAGMDIDEYIIAVRAADSMAKAWRSDVAILSNLEIVRLENARGTILEIVRWDL*
Ga0070727_100608145F093736GAGMAGKDQERVNPHKQAGRHTLITGIGYSVAKTKAQLNRQVRQEALREQLSQQGHEQYISEIISNLSDPEMEYDSLWVQRLKAAADLRLKLMAKYIPDLKSQELTGPEGGDLVIAVQRKRFDGDD*
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