NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0070761_10070578

Scaffold Ga0070761_10070578


Overview

Basic Information
Taxon OID3300005591 Open in IMG/M
Scaffold IDGa0070761_10070578 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F005822Metagenome / Metatranscriptome389Y
F011771Metagenome / Metatranscriptome287Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0070761_100705782F011771N/AMIDSKPDPKRENATASGPTRFGGLDQVDWLMIAISVLLGTVAKQHHFLDLSDQFLEWVLPFLLMVAGYRTRRKVTELIESWRAKAKSPSSE*
Ga0070761_100705783F014867GAGGMRTFFPSSYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALMARKRLRRQALGQDSSDKSKDARTRRFDRYDVLMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFATGILLKPRAVEFIEGRRKTKQAGRNSNNLPSVAAQASASEAGTKTVVHAATKNGDLE*
Ga0070761_100705784F005822GGAGMKVSEQPTAANGAESTADSKITHPPAGEGRRSRAVTDSKPTLPRNTATRRRRNRQDNSETSGEERFFLASGSSDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPVLRKDGLKKNNPAS*
Ga0070761_100705785F001528AGGAGMSERNQIVVVLIVSLLLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGGPSVREYRGGTTTVHAS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.