NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066837_10134463

Scaffold Ga0066837_10134463


Overview

Basic Information
Taxon OID3300005593 Open in IMG/M
Scaffold IDGa0066837_10134463 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)900
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015399Metagenome255Y
F031528Metagenome182Y
F077776Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0066837_101344632F031528GAGGMGIAMTGPIVDKIKGILDEFEDADLGIESNRELIALVIYRELLDDLYKKDERGL*
Ga0066837_101344633F015399GAGMTKQQRLKAELKVVRTLKYWEDADIFELKVKKKIAEMVVAELEDLFGIERGL*
Ga0066837_101344634F077776AGGMKKIVILLITLSGLFGQWKHQTDPTTLRQIYVLNENHIKHYSQHLEWRTEHQVVLIHNMQLAMSKVKKGEYRKQRSQEIADVIQKYVEIEKQHREDLKSLKIELRDLTK*
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