Scaffold Ga0066833_10077152

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066833_10077152

Scaffold Ga0066833_10077152

Overview

Basic Information
Taxon OID	3300005595 Open in IMG/M
Scaffold ID	Ga0066833_10077152 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	921
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012071	Metagenome	284	Y
F012859	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066833_100771522	F012859	AGTAGG	MVRNRKGLAPWSLAREAGIESATVDGTIEVPQYVQPILSTGFVDEKGDWKGAKSSDKEFIIYMDEAVANGAYILTPSVNADGTWPLDMTGYNDLIIGLKGTNSGNYAIEAVMGPDSLSFANLSPVKAAWNLRGGGFPAMSGDDFSNVLVDGAESTTADIWSIFYINLRLKNQKLLQFKITNNSGDISTIETAFMRLV*
Ga0066833_100771523	F012071	N/A	ASGQETVTIGSQGVDGTPASNGMTNMPMTLDTSISVVGSNQVSVAVAMDVDVGSAQAAITLVFQ*

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