NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066841_10009765

Scaffold Ga0066841_10009765


Overview

Basic Information
Taxon OID3300005599 Open in IMG/M
Scaffold IDGa0066841_10009765 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F094377Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0066841_100097653F000659N/AMKKFKEYLKEASKYIVSKNPHDKKWYVMGHVGRNKWMPVSNGFKNKAQAQKWAKSQDNVDDAARGEIGAV*
Ga0066841_100097654F094377N/AGKKTISAFYSMMSRYMESGIATTGGVVAEMDADVIVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGKILRLVIKDYFDGVEKIIKKHKKTMENIFYGYAKSKRSTEDSWDEQLVNNIKVKTIHLIQPTQLKIDTADPDRTHPIDSYEFAKEKAEKLFGTVKEWDFSTELEIYTREVVKKEQPPRNIAY*
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