NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066841_10015206

Scaffold Ga0066841_10015206


Overview

Basic Information
Taxon OID3300005599 Open in IMG/M
Scaffold IDGa0066841_10015206 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058203Metagenome / Metatranscriptome135Y
F066132Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0066841_100152063F058203N/AMSTLANEILMETIFEEVLEEWFPEFDEEQCESIAKTRFESMCQ*
Ga0066841_100152064F066132AGGAMATQFTVNGKDYSHRELNTMYEFFTQVQWDVIDQALDCYAQSQPYEGAEEDTHQVRDTMYELLRAAY*

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