Scaffold Ga0070740_10033629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070740_10033629

Scaffold Ga0070740_10033629

Overview

Basic Information
Taxon OID	3300005607 Open in IMG/M
Scaffold ID	Ga0070740_10033629 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2825
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017111	Metagenome	242	Y
F052529	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070740_100336291	F017111	N/A	EKLAFVNTFLSRFVNIDPLTVKRDTTLALNQMTYTLRQQILSQLNQENFVDTVRQNNVTSTLAVKSAELVSGDPYTAIVFGGKRITTLINGQENEKNLLVKYTIRLAPVPRATANGWTGLEIADYKEEVLQP*
Ga0070740_100336292	F052529	GAGG	MRQIAGFALVLVLVGTAGIPCFAQSKPMAAMKQPGGMQPSNANDSGVVPLSYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIIKQIEVPPAKGKTPIETNMLVYMASGRVVNITLKAGRVDNTAYSIDYFLPPAKSLDDPPPVSKEELEKRFQEQERSELAETMVAEIKEHPKSQPGVVAGGLDLRFYSVKRLGVLALVSFDVENTSSETVDLEDPQVNLITASNNPKDHKKPLVKTEPVEINQSVVSSKQLSAGARAVCLIAFKPPIHDSDQQVVLSISNRAMADKPATYRLE*

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