Scaffold Ga0074649

Basic Information
Taxon OID	3300005613 Open in IMG/M
Scaffold ID	Ga0074649_1005163 Open in IMG/M
Source Dataset Name	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005613 Open in IMG/M

Scaffold ID

Ga0074649_1005163 Open in IMG/M

Source Dataset Name

Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	11542
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (93.10%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11542

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (93.10%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010532	Metagenome	302	N
F015793	Metagenome / Metatranscriptome	252	Y
F032867	Metagenome / Metatranscriptome	179	Y
F046985	Metagenome	150	N
F054777	Metagenome / Metatranscriptome	139	N
F069855	Metagenome	123	N
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100516312	F087019	GAGG	MIGEIIGLGFVTVFMLFCLIGVTFLIADRHYDKKRKDN*
Ga0074649_100516313	F003051	AGGAG	MKTKILKNKVTIDMSVSEYDTLFKYIGKLDSILNTLHETNDLWLSDIHNLSSLKYELVEMLDAEWNTDTYRYIKRGSK*
Ga0074649_100516317	F010532	AGGAG	MNRTLYKKLEDICAREYILSKLSATKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLNKPYESTSRNEQALRGA*
Ga0074649_100516318	F046985	GAGG	MIVDTKEELNEWWLEEFGIDVDASKYVEIRVPAKTYAMLVQIGIFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLRKYPFDRGYLQQATKIRRNILQHLRAFNPIYAEELKSKLFKRRVA*
Ga0074649_100516319	F032867	AGGAG	MDELEKMIDDLIDNHYRVQHLIGTEADESEYLADISEEDDDS*
Ga0074649_100516321	F054777	AGGAG	MSNKINDETLERLYEDAIADDERGLLEVKIKDMVLRYGLHADDDRDEILQLIAEDEFYEQFT*
Ga0074649_100516326	F015793	GAGG	MLSIKTFEDRYNNNKKFHHVNLMGLKFRVANNKRSKRKSNKIFYSTDRGLVFNLLPSRYLCLITK*
Ga0074649_100516328	F069855	GAGG	MAMKKVIELHPLGGTVVKLKHVDGVEPKKLSKNQRKKLLKGYYSKEKHSQLISSIMHGKFYNRKSNNKNGLLPSQYGYVRKSVYKLNPEILAHMIREQEKRIAI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074649_1005163

Overview

Ecosystem & Geography

Associated Families

Sequences