NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1014789

Scaffold Ga0074649_1014789


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1014789 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4951
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006685Metagenome367N
F032086Metagenome181Y
F048960Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0074649_101478910F032086N/AMTSNSNNEPTFLDMNDLCDDSLEALIQHYLKLKHRMPDNISVRERLLELEREQFEREKQTEDNQ*
Ga0074649_101478915F006685N/AMSDDEGKVTKGPTWRMREWGRTAYRNRQAKLRMDGESSQTESAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTVLDNLQFNLPVGRMAYKIGKAFENQARWDKAMELMHPHKKDLLALDDRSKAMKLKQFYDYEEERFTLWDTKCKAGLGAWLLEEIRIETGVWEIGFAVGTQKGHKPERICMPSGQFTDWIKRFDAWKETTRVFKMALPDQPIDWYGLVGGGYSLKHMPPQEFFTGKPMSWFKDYESSYEHAFSAVNKLQKVSWKINKEILDITRKCYDNKRVVGNIPNFSEIPEQPRYTGGDEHE
Ga0074649_10147895F048960AGAAGMKLINKLPTPADQIDKEVAKLFNSKLSVFLGYAFPLLCGLGWLLILLAIFSS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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