Scaffold Ga0070702_100986080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070702_100986080

Scaffold Ga0070702_100986080

Overview

Basic Information
Taxon OID	3300005615 Open in IMG/M
Scaffold ID	Ga0070702_100986080 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	666
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Simiduia → Simiduia agarivorans	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005910	Metagenome / Metatranscriptome	386	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070702_1009860801	F005910	AGAAGG	MKKIILALAFLICAASFSFADTIYLRDGRTIHGTLLGFINGRFVVRVETRNSTLPSSTTSNRQYEGDIQYFRPNEVDRIEIDNRSLDEARYESRTVQVGLDPNWIDSGIELRRGEQVQVSATGVINVGRTRITPDGLRSSDPSAPLPN

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