Scaffold Ga0068864_100000007

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068864_100000007

Scaffold Ga0068864_100000007

Overview

Basic Information
Taxon OID	3300005618 Open in IMG/M
Scaffold ID	Ga0068864_100000007 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	392187
Total Scaffold Genes	383 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	230 (60.05%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068864_100000007169	F013826	N/A	MAVCWRCPRCGEVSCEDDANAEGRALACDHCERPFLPAETQCTVCDAPNPWSRRDSQHFWCRECGNTQTFYGFSGQADATISPSHQT*
Ga0068864_100000007170	F002324	GGAGG	MGEIKLFQICYEGDLTLEVSQTMRRLGAEPNFDQSWQVWLPEGRHSAALVRYLRSHLGHDARLLVACAQFTTARDFLLVRHSLTPGADYSELQEAMEYLGMIVPLPFESTFVIQSDDRTDVQTLGAALAELCPDESLMINGVSHDWAYCNAGTSQMYVADAMEELTFRTF*

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