NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068669_1141457

Scaffold Ga0068669_1141457


Overview

Basic Information
Taxon OID3300005638 Open in IMG/M
Scaffold IDGa0068669_1141457 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_B MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006183Metagenome / Metatranscriptome379Y
F024799Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0068669_11414571F024799AGGMVMLPPEKVPVTPVGKPENVAPVAPVVLYVMGVIAVFTQTVWLSVPGAEVRVMVLLGCTM
Ga0068669_11414572F006183AGGVKVPATVGVPEMVMLPPEKVPVTPAGKSANVAPVAPVVLYVIGVIAVFTQTVWLSVPGSEVRVMVLLGCTMMVPVAVTFPQPPVRVTV*
Ga0068669_11414573F006183AGGMVMLPPEKVPLTPVGKPENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVRVMVLLGRTMMVPVAVTFPQPPVRVTV*
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