Scaffold Ga0077110_1006479

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077110_1006479

Scaffold Ga0077110_1006479

Overview

Basic Information
Taxon OID	3300005639 Open in IMG/M
Scaffold ID	Ga0077110_1006479 Open in IMG/M
Source Dataset Name	Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Combined assembly reannotation Gp0050987, Gp0050988, Gp0050989, Gp0050990, Gp0050991
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	4952
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Methylotrophic Communities From Lake Washington, Seattle, Washington, Usa

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle, USA
Coordinates	Lat. (^o)	47.676484	Long. (^o)	-122.228394	Alt. (m)		Depth (m)	63
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082695	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0077110_10064791	F082695	N/A	LFFVLRSFESETGDETDVVKWAHKLMNKSVANRTITKQEAMCELGQLPMVICSEGIETVIITGSTRCSNETSTILSQYKKRPGTQEHLSLHEFFHTKKNKRLPATRSQREIVPHYVGGSGQPVYPLTKQSISYARSEILKHMPWSQKNPLPNDCDWVALFEDFLNDARCPHSVTIGYERAKLRHELRKKGIEEACQPDTEHSNPTDDLDDDEIGDVIAISESMGYTTDE

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