NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075035_1045225

Scaffold Ga0075035_1045225


Overview

Basic Information
Taxon OID3300005640 Open in IMG/M
Scaffold IDGa0075035_1045225 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_052 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6139Long. (o)-149.3145Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033440Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0075035_10452251F033440N/ALLPATVFLLTGYGSALQNSLAIPLLEANVSKRPFARPQRLFPFENHRGEVNAPAYLFDEILSFSSSPFGSELPSSATLFTRPGMIVAQNPLPSHQPRTLKRPSNFRSPSGLSSLLDRSAQLADRSEKLTFVHGPITFHSPNALISLKLSALGSPLQIRYRSPGLL
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