Scaffold Ga0075035_1518170

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075035_1518170

Scaffold Ga0075035_1518170

Overview

Basic Information
Taxon OID	3300005640 Open in IMG/M
Scaffold ID	Ga0075035_1518170 Open in IMG/M
Source Dataset Name	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_052 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2284
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location Name	Alaska, USA
Coordinates	Lat. (^o)	68.6139	Long. (^o)	-149.3145	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046970	Metagenome / Metatranscriptome	150	Y
F095910	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075035_15181702	F046970	GAGG	MKKMILAALLAALPAVAAEEFKPIKASESVTYPLPPMPLPAVATSNGKWAETEDSPALRVSRAWVKLGQAAGVERSDATKRLYTGWKNETAHSGPHSRAAQASYARFLAAYKQDLDQARGIYEGVLRDVDAMDSDGAGEANADGTSNGLAKDADEQIKAADRDDRLTNSACFLSPDTCQGNDPSDKALQDEIASLVRDTLEAGGPDGGLTLYALKRKAGLLALRAKVMGAVTQRAAARLATEVATQGDGQSGPKALPLPISNLASASSKRAVNASDPYR*
Ga0075035_15181704	F095910	N/A	LPLFQAGVYLGQPPIIEKACAAARRVTHPALRSSGNVETVLQGCGALAVGKQSNDPCSEGEKKLREAYAQLAANKATDAGHSAADGVRMLRDRCPKMMAPLRTPVDPSTRGFLIVWTLHANDAPPATFLAGLSAPGTAEAINEAFLRGVQAVKGLARNP*

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