NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079203_1009239

Scaffold Ga0079203_1009239


Overview

Basic Information
Taxon OID3300005647 Open in IMG/M
Scaffold IDGa0079203_1009239 Open in IMG/M
Source Dataset NameMarine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5367
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F024709Metagenome204Y
F048070Metagenome148Y
F055389Metagenome138Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0079203_10092391F024709N/AWVDQVTGLRRAVERADGRGVDSALAIIGQAVARAVDGDAKYERFAQHLEAVQPEEAAAPTRSNAQSVLRRRGHADGGASGWVLPSARNTLARSVSQESGASVGFRHTCRRDSRRRSGEKKE*
Ga0079203_10092392F048070AGGMAHVVGFVSLASVDKSTLYSKHARMAVAYQLVLVHCGLTTVSSSVFVTKRRTTESKCCTGGTRNPPGSTGTEGSLPISVACADFGHTYVYGL*
Ga0079203_10092393F104363GAGMDNSVTGNMDMLDSGYPRGVYDDVGHGCEPDLSATSSRWRLPFVPWYVLLLLAKKAHHLVAWEILQGFPGVVYRPLVEPAHLSATAVASLA*
Ga0079203_10092394F013269AGGAMVTADTFFLAVNVNDKRGGIRVCVDDHEGSNGFALQLFLPIVVGRVDVVADLDVRIAGCDPMVEVSFVTLLRHTQGLDYDGDLLAQAGHELAFAS*
Ga0079203_10092399F055389AGGVPVLGLPGGTRKRTVTRLLCRALRHYEIAATLGPCMRVMRSCRPVLDTGAGVNIVRTSVLPANWMAYAEELTTLSRIRDANNNRLVTKYAIHLYVYTGGVRLFDRFLVSDNLSVPCILGTEFIEQNIEAILPCLRKIVWQEHVRCTKELPWPMPILACLNDSAWDRHWQDKPARVRACKQVRFDGQQEEWIMATCDTPGMVTITPNAR*
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