NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079203_1010617

Scaffold Ga0079203_1010617


Overview

Basic Information
Taxon OID3300005647 Open in IMG/M
Scaffold IDGa0079203_1010617 Open in IMG/M
Source Dataset NameMarine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4914
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F031346Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0079203_10106172F031346GGAGMVVRIFRQKKKHVQGHEWQTLTRQSRRQARPTTAANNVMDSTWILTIQHDHVTGDGVIYANVWWTDLSTSTTITEVLPVAWLKSTLPSMTHKFGYDPQLALRHFPRLNREYGPYTYVWPKSAQATLVGRDSSMPVLLNGFLVPPVQQLDSDLRRMVTTTEEATVVISQCTNTSWYAAAICACFEHHVLLPSDARDANPTPWAMLACHYLHSYDN*
Ga0079203_10106174F013269AGGAMVTADAFFLPFDVNYKRGSIRVRVNKPEGSNGLALQLILRIVVGRIDVVANLDVRIAGCDPVVEVAFVTLLRLAQGLDYDRDMSAKAGCELAFAS*
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