NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079203_1010753

Scaffold Ga0079203_1010753


Overview

Basic Information
Taxon OID3300005647 Open in IMG/M
Scaffold IDGa0079203_1010753 Open in IMG/M
Source Dataset NameMarine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4872
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F048070Metagenome148Y
F104363Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0079203_10107535F048070AGGMAHGVGFVSLASVDKSTSYSKHAHMAVAYQLVFVHYGMTPVASSVEVDRRRRMESKCCTGGARNPFGSAGTEGSDSISVACAEFGHTCVYGP*
Ga0079203_10107536F104363GAGMDDSVTGNMDMLDGGYSHGVHDDVGHCCEPGLWATSPCWSLPFITWYMLLLSKKAHHQVAWKILQGFLGVVCRPVVERAHLSAIAVASLA*
Ga0079203_10107537F013269AGGAGMVTADTFFLPVNVNDKRGGIRVCVDDHEGSNGFALQLVLPIVAGRVYIVADLDVRIADCDPMVQFTFVTLLCLTQELKYDGDLLAQAGHERAFAS*
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