Scaffold Ga0079203_1019154

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079203_1019154

Scaffold Ga0079203_1019154

Overview

Basic Information
Taxon OID	3300005647 Open in IMG/M
Scaffold ID	Ga0079203_1019154 Open in IMG/M
Source Dataset Name	Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3323
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Bantry Bay, Ireland
Coordinates	Lat. (^o)	51.64	Long. (^o)	-9.71	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039926	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079203_10191542	F039926	GGA	VTSMVPQLVHCQDVVKLHTFVSGDLEALLLACFGLGLRFALVAFVLVSNSIWCQGVGVRAGARGGSTWAGGDYLRGAVGWERPSDLRTTNKPRSHTYTQAQATQPLHRGPPTPIPTAFQQVMGPEPGL*

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