NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079203_1026213

Scaffold Ga0079203_1026213


Overview

Basic Information
Taxon OID3300005647 Open in IMG/M
Scaffold IDGa0079203_1026213 Open in IMG/M
Source Dataset NameMarine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2677
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameBantry Bay, Ireland
CoordinatesLat. (o)51.64Long. (o)-9.71Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F036067Metagenome170Y
F060562Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0079203_10262131F036067GGAMRWRLRLSEYTFHMVYKPGASYHLPDFLSRASTVAPPEDIHNDIPCLALAETANVLRTGRYTGTDTPEPVEFDDVVEAQHADDFCVEMSTRVKRGMAKAFFRNEHHALYLRAPYGNQLVIPKSLRERVLTLEHHATVAAHPGMNR
Ga0079203_10262132F023776N/AVIRSDEELLPIEEVPQLEDSPHDAEAFALRCEVVLLCSSESSASISDRMEQFARFLLEEGTTNLVGAYVNVNEELPIGL*
Ga0079203_10262134F060562N/AIQDVKDVFITGLSDLVQAHVRVLNDQFLDRTLSETVATAQMYWDGTLRHYKISATLCPCMRVMRSCRPVLDTSAGVHTVRTSVLPANWMAYAEKLTTLPRIRDANNNRLVTKYAIHLYVDTGGVRLFDPFLVSDNLSVPCILGTEFIELNIEEILLRLRKIVCQEHVRCTEEPPRPTPMLACLNDSAWDRHWQDKPARVGACKQVRVDGQQEEWIMATCDTPGMATITPNARLCRHKSMAVARGLAIVKPDEPFLVKLCNFGKYQVIVRKNSTLGFAEPYKGPMLAAVLDNNHPKDGTDTSWDDASRDPLEDLDLSEAPEYLHKQI*
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