NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079202_10115773

Scaffold Ga0079202_10115773


Overview

Basic Information
Taxon OID3300005651 Open in IMG/M
Scaffold IDGa0079202_10115773 Open in IMG/M
Source Dataset NameMarine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameUSA: Blueberry Hill, Maine
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060562Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0079202_101157731F060562N/AGVNIVRTSVLPANWMAYAEELTTLARIRDANNNRLVTRYAIHLYVDTGGVRLFDRFLVSDNLSVPCILGTEFIEQNIEAILPRLGKIVWQEHVRCTEELPRPTPILAGLNESAWDRHWQDKPARVRACKQVRVDGQQEEWNMATCDTPGMVTITPNARLCRHKLMPVARGRAIVKPDEPFLVKLCNFGEDQVIVCKNSTLGFAEPYQGPMLSAVLDDNNPKYGTDTSSDDASRDPLEDLDLSEAPEYLHKQIRDMLKTHSSMWDGILGVIRATQHAIVTPPDALPIRAQPYRTGPFKRQIIADQI
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