NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056135_10006036

Scaffold Ga0056135_10006036


Overview

Basic Information
Taxon OID3300005652 Open in IMG/M
Scaffold IDGa0056135_10006036 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4546
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013861Metagenome267Y
F091456Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0056135_100060365F013861N/AMLNDDVRRFRNYFWNTQPLIADVLAVKSVMHNFHCQPIKLTVHSSRQPTLSGTHLNTSELVELLQRSAVEHLTTVRQLEAQDFGSVVTTVTTDFEALYAYKHGDYQHCLQLSTQNVRMLLYADKTHTVPTYPELIQLLDDDIVSLTALTLIVNPECRRRKVNVYITQLTLSLYLMTQSQLKLRHSVAPTLDYIEVAQKRHSAQCMLDQLTLKLTKRNILSSIYT*
Ga0056135_100060366F091456N/AMSREHFDCWMTELKKTDTYLSVYFTAVAFLHVAYKISRIGFTDELMDVLVTITGHFISRRHHPSHCSSELLLSKATKLMKVTANNSHSTMQLIEIQLSKAYLHRALGCKYSDSNSIYCLANVYMAVLYYSTGQYQTAIDHCTLVTRSQDHSQCSSHVVQGEFSLKIDDDIDNILGLTVFYQYVLSAALIQQQHRQYVSVFTTELFADCLNISVCQSHKPC*
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