NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056133_10000504

Scaffold Ga0056133_10000504


Overview

Basic Information
Taxon OID3300005653 Open in IMG/M
Scaffold IDGa0056133_10000504 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9902
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003860Metagenome464Y
F005229Metagenome407Y
F029995Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0056133_100005041F005229N/AMVSIAVSKMSMTELISVVPGMQVNGQYYRDALLSQQMLPAIKHVASATFVFQQDNASSHRASYSKKRRTQLVLISGHQTAHT*
Ga0056133_1000050418F029995N/AMFNVSALLVNDALKPATPLTNGAISETLGQFSPLSDDRLLQLVDCRESSTLIDHLSKATQTA*
Ga0056133_100005042F003860N/AMQQRVYEYRMNSVDELKQRLIEVCNSQQQNVIDAAINEWRKQLRACMHADGQHIEHSLQAHVTNGSYGQLKYK*
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