NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0056133_10267284

Scaffold Ga0056133_10267284


Overview

Basic Information
Taxon OID3300005653 Open in IMG/M
Scaffold IDGa0056133_10267284 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001112Metagenome774Y
F004637Metagenome429Y

Sequences

Protein IDFamilyRBSSequence
Ga0056133_102672841F004637N/AADTLRDLVTLTFDLLTLVSGHTWRVTWSIPPPSLKILRLFVLEL*
Ga0056133_102672842F001112AGGMLYNFAADNFYIMKLCSRRFVLRCRSRPKYDTSMHFDAHFEEVRGGVEPCWMARWKALAEFLLSVIGLRFLSLTVEVLQGKTCQNLQPSGMGRSL*
Ga0056133_102672843F001112N/ARYNIAADSFYIMKLCSRLFVLYCRSRPKDDRSRHFDPHSEEVRGGVEPWWMARWKARAEFLLSVIELLFTARAMLALRALY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.