Scaffold Ga0079204_10071724

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079204_10071724

Scaffold Ga0079204_10071724

Overview

Basic Information
Taxon OID	3300005654 Open in IMG/M
Scaffold ID	Ga0079204_10071724 Open in IMG/M
Source Dataset Name	Porphyra Blade Metagenome Co-Assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1771
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	USA: Blueberry Hill, Maine
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045508	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079204_100717242	F045508	GGA	VRCWLKADCLPTEAVALLRLQLSDIQVVAELAHMDVSHLVAMMANASLEHEFDGLSGQEQVVLAVRRWLTAESDVEAIDQTVHMVLTRRDDE*

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